https://airwiki.elet.polimi.it/api.php?action=feedcontributions&feedformat=atom&user=RiccardoDesantis 2026-04-15T22:01:13Z User contributions MediaWiki 1.25.6 https://airwiki.elet.polimi.it/index.php?title=Phylogenetic_Trees&diff=10906 2010-03-22T11:51:21Z

<p>RiccardoDesantis: </p> <hr /> <div>{{Project<br /> |title=Phylogenetic Trees<br /> |image=Toloverview.jpg<br /> |proposal=Statistical inference for phylogenetic trees<br /> |coordinator=MatteoMatteucci<br /> |tutor=LuigiMalago<br /> |students=RiccardoDesantis<br /> |resarea=Machine Learning<br /> |restopic=Information Geometry; Stocastic Optimization; Evolutionary Computation<br /> |status=Active<br /> |start=2009/05/01<br /> |level=Bs<br /> |type=Thesis<br /> }}<br /> <br /> The project focus on the study, implementation, comparison and analysis of different statistical inference techniques for phylogenetic trees.<br /> <br /> The aim of this project is to create a taxonomy of malicious software (aka malware), because new malwares are often related to the older ones, creating something like an evolutionary relationship between them.<br /> <br /> The framework used is '''[http://www.r-project.org/ R]''', a software environment for statistical computing which already provide a set of classes implementhing those phylogenetic inference models and methods, good enough to start.<br /> <br /> We already have got a very large amount of data about classified malwares (collected by a team of PoliMi researchers), so we just have to test how standard phylogenetic methods react to such an enormous group of data.<br /> <br /> == Bibliography ==<br /> # Joseph Felsenstein. '''Inferring Phylogenies'''. Sinauer Associates, Inc., 2004.<br /> # Barry G. Hall. '''Phylogenetic trees made easy: A How-To manual'''. Sinauer Associates, Inc., third edition, 2008.<br /> # Masatoshi Nei and Sudhir Kumar. '''Molecular Evolution and Phylogenetics'''. Oxford University Press, 2000.<br /> # Emmanuel Paradis. '''Analysis of Phylogenetics and Evolution with R'''. Springer, 2006.<br /> # Charles Semple and Mike Steel. '''Phylogenetics'''. Oxford University Press, 2003.<br /> <br /> == Useful links ==<br /> * [http://www.wikipedia.org Wikipedia]<br /> * [http://www.r-project.org/ Homepage of the R project]<br /> * [http://cran.r-project.org/ List of packages for R]<br /> * [http://rwiki.sciviews.org/doku.php R Wiki]</div>

RiccardoDesantis https://airwiki.elet.polimi.it/index.php?title=Talk:Phylogenetic_Trees&diff=10905 2010-03-22T11:48:56Z

<p>RiccardoDesantis: New page: == Project diary == 22/03/2010 : Project page created == More useful links == * http://rm.mirror.garr.it/mirrors/CRAN/ * http://www.r-phylo.org * https://stat.ethz.ch/mailman/listinfo/r-s...</p> <hr /> <div>== Project diary ==<br /> 22/03/2010<br /> : Project page created<br /> <br /> == More useful links ==<br /> * http://rm.mirror.garr.it/mirrors/CRAN/<br /> * http://www.r-phylo.org<br /> * https://stat.ethz.ch/mailman/listinfo/r-sig-phylo<br /> * http://paleobiology.si.edu/pdfs/hunt/Rcourse-5.pdf</div>

RiccardoDesantis https://airwiki.elet.polimi.it/index.php?title=Phylogenetic_Trees&diff=10904 2010-03-22T11:40:53Z

<p>RiccardoDesantis: </p> <hr /> <div>{{Project<br /> |title=Phylogenetic Trees<br /> |image=Toloverview.jpg<br /> |proposal=Statistical inference for phylogenetic trees<br /> |coordinator=MatteoMatteucci<br /> |tutor=LuigiMalago<br /> |students=RiccardoDesantis<br /> |resarea=Machine Learning<br /> |restopic=Information Geometry; Stocastic Optimization; Evolutionary Computation<br /> |status=Active<br /> |start=2009/05/01<br /> |level=Bs<br /> |type=Thesis<br /> }}<br /> <br /> The project focus on the study, implementation, comparison and analysis of different statistical inference techniques for phylogenetic trees.<br /> <br /> The aim of this project is to create a taxonomy of malicious software (aka malware), because new malwares are often related to the older ones, creating something like an evolutionary relationship between them.<br /> <br /> The framework used is '''[http://www.r-project.org/ R]''', a software environment for statistical computing which already provide a set of classes implementhing those phylogenetic inference models and methods, good enough to start.<br /> <br /> We already have got a very large amount of data about classified malwares (collected by a team of PoliMi researchers), so we just have to test how standard phylogenetic methods react to such an enormous group of data.<br /> <br /> == Bibliography ==<br /> # Joseph Felsenstein. '''Inferring Phylogenies'''. Sinauer Associates, Inc., 2004.<br /> # Barry G. Hall. '''Phylogenetic trees made easy: A How-To manual'''. Sinauer Associates, Inc., third edition, 2008.<br /> # Masatoshi Nei and Sudhir Kumar. '''Molecular Evolution and Phylogenetics'''. Oxford University Press, 2000.<br /> # Emmanuel Paradis. '''Analysis of Phylogenetics and Evolution with R'''. Springer, 2006.<br /> # Charles Semple and Mike Steel. '''Phylogenetics'''. Oxford University Press, 2003.</div>

RiccardoDesantis https://airwiki.elet.polimi.it/index.php?title=Phylogenetic_Trees&diff=10903 2010-03-22T11:39:40Z

<p>RiccardoDesantis: New page: {{Project |title=Phylogenetic Trees |image=Toloverview.jpg |proposal=Statistical inference for phylogenetic trees |coordinator=MatteoMatteucci |tutor=LuigiMalago |students=RiccardoDesantis...</p> <hr /> <div>{{Project<br /> |title=Phylogenetic Trees<br /> |image=Toloverview.jpg<br /> |proposal=Statistical inference for phylogenetic trees<br /> |coordinator=MatteoMatteucci<br /> |tutor=LuigiMalago<br /> |students=RiccardoDesantis<br /> |resarea=Machine Learning<br /> |restopic=Information Geometry; Stocastic Optimization; Evolutionary Computation<br /> |status=Active<br /> |start=2009/05/01<br /> |level=Bs<br /> |type=Thesis<br /> }}<br /> The project focus on the study, implementation, comparison and analysis of different statistical inference techniques for phylogenetic trees.<br /> <br /> The aim of this project is to create a taxonomy of malicious software (aka malware), because new malwares are often related to the older ones, creating something like an evolutionary relationship between them.<br /> <br /> The framework used is '''[http://www.r-project.org/ R]''', a software environment for statistical computing which already provide a set of classes implementhing those phylogenetic inference models and methods, good enough to start.<br /> <br /> We already have got a very large amount of data about classified malwares (collected by a team of PoliMi researchers), so we just have to test how standard phylogenetic methods react to such a enormous group of data.<br /> == Bibliography ==<br /> # Joseph Felsenstein. '''Inferring Phylogenies'''. Sinauer Associates, Inc., 2004.<br /> # Barry G. Hall. '''Phylogenetic trees made easy: A How-To manual'''. Sinauer Associates, Inc., third edition, 2008.<br /> # Masatoshi Nei and Sudhir Kumar. '''Molecular Evolution and Phylogenetics'''. Oxford University Press, 2000.<br /> # Emmanuel Paradis. '''Analysis of Phylogenetics and Evolution with R'''. Springer, 2006.<br /> # Charles Semple and Mike Steel. '''Phylogenetics'''. Oxford University Press, 2003.</div>

RiccardoDesantis https://airwiki.elet.polimi.it/index.php?title=User:RiccardoDesantis&diff=10902 2010-03-22T10:58:09Z

<p>RiccardoDesantis: </p> <hr /> <div>{{Student<br /> |category=Student<br /> |firstname=Riccardo, Benito<br /> |lastname=Desantis<br /> |photo=RiccardoDesantis.jpg<br /> |email=effetti@gmail.com<br /> |projectpage=Phylogenetic Trees<br /> |advisor=LuigiMalago<br /> |status=active<br /> }}<br /> Contact me via:<br /> * EMail: [mailto:effetti@gmail.com effetti@gmail.com]<br /> * Jabber: &lt;nowiki&gt;effetti@gmail.com&lt;/nowiki&gt;<br /> * Skype: riccardo.ft</div>

RiccardoDesantis https://airwiki.elet.polimi.it/index.php?title=User:RiccardoDesantis&diff=10901 2010-03-22T10:48:17Z

<p>RiccardoDesantis: </p> <hr /> <div>{{Student<br /> |category=Student<br /> |firstname=Riccardo, Benito<br /> |lastname=Desantis<br /> |photo=RiccardoDesantis.jpg<br /> |email=effetti@gmail.com<br /> |projectpage=Phylogenetic Trees<br /> |advisor=LuigiMalago<br /> |status=active<br /> }}</div>

RiccardoDesantis https://airwiki.elet.polimi.it/index.php?title=User:RiccardoDesantis&diff=10900 2010-03-22T09:09:14Z

<p>RiccardoDesantis: New page: {{Student |category=Student |firstname=Riccardo, Benito |lastname=Desantis |photo=RiccardoDesantis.jpg |email=effetti@gmail.com |advisor=LuigiMalago; MatteoMatteucci |status=active }}</p> <hr /> <div>{{Student<br /> |category=Student<br /> |firstname=Riccardo, Benito<br /> |lastname=Desantis<br /> |photo=RiccardoDesantis.jpg<br /> |email=effetti@gmail.com<br /> |advisor=LuigiMalago; MatteoMatteucci<br /> |status=active<br /> }}</div>

RiccardoDesantis https://airwiki.elet.polimi.it/index.php?title=File:RiccardoDesantis.jpg&diff=10899 2010-03-22T09:05:10Z

<p>RiccardoDesantis: La foto di Riccardo Desantis.</p> <hr /> <div>La foto di Riccardo Desantis.</div>

RiccardoDesantis